Bioactivities and Molecular Identification from Marine Sediment-Derived Fungi Isolated from Amed and Tulamben Beaches

Authors

  • Ni Made Widya Wulandari Universitas Udayana
  • Ni Kadek Dwijayanti Universitas Udayana
  • Ni Putu Ananda Eka Putri Universitas Udayana
  • I Putu Yogi Astara Putra Universitas Udayana
  • Ni Putu Eka Leliqia Universitas Udayana
  • Joko Tri Wibowo Badan Riset dan Inovasi Nasional; STIKES Mamba’ul ‘Ulum Surakarta
  • Ida Bagus Nyoman Putra Dwija Universitas Udayana
  • Ni Putu Ariantari Universitas Udayana

DOI:

https://doi.org/10.36733/medicamento.v11i1.10745

Keywords:

antioxidant, bioactive compounds, marine fungi, marine sediment, antimicrobial

Abstract

Marine fungi have demonstrated the ability to produce promising new bioactive compounds. This study aims to isolate fungi from the marine sediments collected from Amed and Tulamben Beaches, Bali, Indonesia and investigate the bioactivity of the fungal extracts. Following fungal isolation, pure isolates were obtained and fermented on rice media containing salt and without salt. Next, secondary metabolites were extracted with ethyl acetate, then separated by liquid-liquid extraction using methanol containing 10% water and n-hexane. The resulting MeOH extracts were analyzed for their phytochemical content and tested for their antimicrobial and antioxidant activities using the disc diffusion and 2,2-diphenyl-1-picrylhydrazyl (DPPH) method, respectively. In total, three fungal isolates were obtained. Molecular identification from the Internal Transcribed Spacer (ITS) region of the isolates showed the closest relationship to Aspergillus sp., Aspergillus tamarii, and Trichoderma sp. Phytochemical analysis showed all fungal extracts contained alkaloids and polyphenols. Moreover, extract from Trichoderma sp. SED-TU (1) (NS) inhibited Staphylococcus aureus, Staphylococcus epidermidis, and Streptococcus mutans with inhibition zone diameters of 4.69±0.16; 3.51±0.01, and 3.49±0.25 mm, respectively. Extract from Aspergillus tamarii RM-S-SED-AM (S) inhibited Candida albicans with an inhibition zone of 7.04±0.22 mm and also had strong antioxidant activity with an IC50 value of 62.00±0.35 µg/mL. This study indicates that fungal isolates from marine sediments have great potential as a source of bioactive natural products.

Author Biographies

Ni Made Widya Wulandari, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

Ni Kadek Dwijayanti, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

Ni Putu Ananda Eka Putri, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

I Putu Yogi Astara Putra, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

Ni Putu Eka Leliqia, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

Joko Tri Wibowo, Badan Riset dan Inovasi Nasional; STIKES Mamba’ul ‘Ulum Surakarta

Research Center for Vaccine and Drugs; STIKES Mamba’ul ‘Ulum Surakarta

Ida Bagus Nyoman Putra Dwija, Universitas Udayana

Department of Microbiology, Faculty of Medicine

Ni Putu Ariantari, Universitas Udayana

Department of Pharmacy, Faculty of Mathematics and Natural Sciences

References

Baker RE, Mahmud AS, Miller IF, et al. Infectious disease in an era of global change. Nat Rev Microbiol. 2022;20(4):193-205. doi:10.1038/s41579-021-00639-z

Raut SK, Khullar M. Oxidative stress in metabolic diseases: current scenario and therapeutic relevance. Mol Cell Biochem. 2023;478(1):185-196. doi:10.1007/s11010-022-04496-z

Burhamzah R, Rante H. Isolasi dan Skrining Aktinomisetes Laut Penghasil Senyawa Antibakteri-Multi Drug Resistance dari Sedimen Laut Pantai Galesong. Majalah Farmasi dan Farmakologi. 2020;23(3):79-81. doi:10.20956/mff.v23i3.9397

Zukhruf N, Kiromah W, Husein S, et al. Uji Aktivitas Antioksidan Ekstrak Etanol Daun Ganitri (Elaeocarpus Ganitrus Roxb.) dengan Metode DPPH (2,2 Difenil-1-Pikrilhidazil) Antioxidant Activity Test of Ganitri (Elaeocarpus Ganitrus Roxb.) Leaf Ethanol Extract Using the DPPH (2,2 Difenil-1-Pikrilhidazil) Method. Jurnal Farmasi Indonesia. 2021;18(1):60-67. http://journals.ums.ac.id/index.php/pharmacon

Yurchenko AN, Girich E V., Yurchenko EA. Metabolites of Marine Sediment-Derived Fungi: Actual Trends of Biological Activity Studies. Mar Drugs. 2021;19(2):1-38. doi:10.3390/MD19020088

Xu X, Yang H, Xu H, Yin L, Chen Z, Shen H. Diphenyl ethers from a marine-derived isolate of Aspergillus sp. CUGB-F046. Nat Prod Res. 2018;32(7):821-825. doi:10.1080/14786419.2017.1363754

Chen WH, Li KL, Lin XP, et al. Antioxidant CPA-type indole alkaloids produced from the deep-sea derived fungus Aspergillus sp. SCSIO 41024. Nat Prod Res. 2021;35(23):5266-5270. doi:10.1080/14786419.2020.1749614

Kjer J, Debbab A, Aly AH, Proksch P. Methods for Isolation of Marine-Derived Endophytic Fungi and Their Bioactive Secondary Products. Nat Protoc. 2010;5(3):479-490. doi:10.1038/nprot.2009.233

Ariantari NP, Putra IPYA, Leliqia NPE, et al. Antibacterial and cytotoxic secondary metabolites from endophytic fungi associated with Antidesma bunius leaves. J Appl Pharm Sci. 2023;13(7):132-143. doi:10.7324/JAPS.2023.101347

Putra IPYA, Ratnasantasyacitta ESP, Putra AAGRY, Ariantari NP. Investigation of Antibacterial Activity and Toxicity of Extracts of Lumnitzera racemosa-derived Endophytic Fungi. In: AIP Conference Proceedings. Vol 3132. American Institute of Physics; 2024:040003(1)-040003(7). doi:10.1063/5.0211549

Ghannam M, Shammaa E, Ali-Nizam A. Determining the quality of the powders of Xanthium Strumarium and Xanthium Spinosum by microscopic examination and preliminary tests. SN Appl Sci. 2020;2(9):1-12. doi:10.1007/s42452-020-03390-x

Edeoga HO, Okwu DE, Mbaebie BO. Phytochemical constituents of some Nigerian medicinal plants. Afr J Biotechnol. 2005;4(7):685-688. http://www.academicjournals.org/AJB

Jones WP, Kinghorn AD. Extraction of plant secondary metabolites. Methods in Molecular Biology. 2012;864(13):341-366. doi:10.1007/978-1-61779-624-1_13

Santoso P, Juliadi D, Udayani NNW, Separsa IPPJ, Mahayani IAGS, Trismawan IGY. Skrining Fitokimia, Formulasi dan Antioksidan Sediaan Granul Effervescent Ekstrak N-Butanol Buah Dewandaru (Eugenia uniflora L.). Malahayati Nursing Journal. 2023;5(2):541-555. doi:10.33024/mnj.v5i2.7509

Ariantari NP, Putu Yogi Astara Putra I, Wibowo JT, et al. Evaluation of Antibacterial and Toxicity Properties of Marine Endophytic Fungi from Red Algae Gracilaria Salicornia and Chondrus sp. In: BIO Web of Conferences. Vol 92. EDP Sciences; 2024:1-12. doi:10.1051/bioconf/20249202019

Sembiring E N, Elya B, Sauriasari R. Free radicals, antioxidants and functional foods: Impact on human health. Pharmacog Journal. 2018;10(8):123-127. doi:10.4103/0973-7847.70902

Biao H. He Biao and Liena, "The Antioxidant Activity Test with DPPH and Antibacterial Method with Minimum Inhibitory Concentration Method of Andaliman Fruit (Zanthoxylum acanthopodium DC The Antioxidant Activity Test with DPPH and Antibacterial Method with Minimum Inhibitory Concentration Method of Andaliman Fruit (Zanthoxylum acanthopodium DC.). International Journal of Multidisciplinary Research and Publications (IJMRAP). 2023;5(10):62-65.

Alemu B, Molla MD, Tezera H, Dekebo A, Asmamaw T. Phytochemical composition and in vitro antioxidant and antimicrobial activities of Bersama abyssinica F. seed extracts. Sci Rep. 2024;14(1):1-10. doi:10.1038/s41598-024-56659-1

Davis WW, Stout TR. Disc Plate Method of Microbiological Antibiotic Assay I. Factors Influencing Variability and Error1. Appl Microbiol. 1971;22:659-665. https://journals.asm.org/journal/am

Maryadi M, Yusuf F, Farida S. Uji Aktivitas Antibakteri Ekstrak Etanol Tanaman Obat Suku Musi di Kabupaten Musi Banyuasin, Sumatera Selatan. Jurnal Kefarmasian Indonesia. 2017;7(2). doi:10.22435/jki.v7i2.6070.127-135

Endra Pujiastuti, Ricka Islamiyati. Aktivitas Antioksidan Fraksi Etil Asetat dan Air Ranting Buah Parijoto (Medinilla speciosa Blume) dengan Peredaman Radikal Bebas DPPH. Cendekia Journal of Pharmacy. 2021;5(2):135-144.

Raja HA, Miller AN, Pearce CJ, Oberlies NH. Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community. J Nat Prod. 2017;80(3):756-770. doi:10.1021/acs.jnatprod.6b01085

Abdel-Azeem AM, Salem FM, Abdel-Azeem MA, Nafady NA, Mohesien MT, Soliman EA. Biodiversity of the Genus Aspergillus in Different Habitats. In: New and Future Developments in Microbial Biotechnology and Bioengineering: Aspergillus System Properties and Applications. Elsevier Inc.; 2016:3-28. doi:10.1016/B978-0-444-63505-1.00001-4

Kuzikova I, Rybalchenko O, Kurashov E, Krylova Y, Safronova V, Medvedeva N. Defense Responses of the Marine-Derived Fungus Аspergillus tubingensis to Alkylphenols Stress. Water Air Soil Pollut. 2020;231(6):1-18. doi:10.1007/s11270-020-04639-2

Fathy N, Dahab A, Awad MF, et al. Marine-derived fungus, Penicillium aurantiogriseum AUMC 9757: a producer of bioactive secondary metabolites. J Basic Appl Mycol Egypt. 2013;4(1):77-83. https://www.researchgate.net/publication/261064145

Khusnullina AI, Bilanenko EN, Kurakov A V. Microscopic Fungi of White Sea Sediments. Contemp Probl Ecol. 2018;11(5):503-513. doi:10.1134/S1995425518050062

Pham TT, Dinh K V., Nguyen VD. Biodiversity and Enzyme Activity of Marine Fungi with 28 New Records from the Tropical Coastal Ecosystems in Vietnam. Mycobiology. 2021;49(6):559-581. doi:10.1080/12298093.2021.2008103

Moningka KC, Kojong NS, Sudewi S. Uji Aktivitas Antibakteri Ekstrak Daun Ekor Kucing (Acalypha hispida Burm. F.) terhadap Bakteri Staphylococcus aureus dan Escherichia colisecara In-Vitro. PHARMACON. 2015;4(3):193-202.

Zulharmitta, Elrika D, Rivai H. Penentuan Pengaruh Jenis Pelarut Ekstraksi terhadap Perolehan Kadar Senyawa Fenolat dan Daya Aktiosidan dari Herba Meniran (Phyllanthus niruri L.). Jurnal Farmasi Higea. 2010;2(1):37-45.

Nurcahyanti ADR, Dewi L, Timotius KH, et al. Aktivitas Antioksidan dan Antibakteri Ekstrak Polar dan Non-Polar Biji Selasih (Ocimum sanctum Linn). J Teknol dan Industri Pangan. 2011;22:1-6.

Tsuda M, Mugishima T, Komatsu K, et al. Speradine A, a New Pentacyclic Oxindole Alkaloid from a Marine-Derived Fungus Aspergillus tamarii. Tetrahedron. 2003;59(18):3227-3230. doi:10.1016/S0040-4020(03)00413-7

Xu C, Xu K, Yuan XL, et al. Characterization of diketopiperazine heterodimers as potential chemical markers for discrimination of two dominant black aspergilli, Aspergillus niger and Aspergillus tubingensis. Phytochemistry. 2020;176(1):1-8. doi:10.1016/j.phytochem.2020.112399

Sirimangkalakitti N, Lin J, Harada K, Setiawan A, Arisawa M, Arai M. Chemical Constituents and Anticancer Activities of Marine-Derived Fungus Trichoderma lixii. Molecules. 2024;29(9). doi:10.3390/molecules29092048

Christianah B, Tayo A. Molecular Identification and Antimicrobial Activity of Endophytic Fungi Aspergillus tamarii (Trichomaceae). Niger J Pharm Sci. 2017;16(1):41-48. https://www.researchgate.net/publication/348923135

Padhi S, Das D, Panja S, Tayung K. Molecular Characterization and Antimicrobial Activity of an Endolichenic Fungus, Aspergillus sp. Isolated from Parmelia caperata of Similipal Biosphere Reserve, India. Interdiscip Sci. 2017;9(2):237-246. doi:10.1007/s12539-016-0146-y

Handayani D, Rivai H, Mulyana R, Suharti N, Rasyid R, Hertiani T. Antimicrobial and cytotoxic activities of endophytic fungi isolated from mangrove plant Sonneratia alba Sm. J Appl Pharm Sci. 2018;8(2):049-053. doi:10.7324/JAPS.2018.8207

Ramadan A, Shehata R, EL-Sheikh H, Zidan S, Al-Bedak osama. GC-MS Analysis, Antifungal, and Antioxidant Activity of Rice Straw-Based Extract Produced by Aspergillus tubingensis AUMC 15759 in Solid State Fermentation. Egyptian Academic Journal of Biological Sciences, G Microbiology. 2023;15(2):43-60. doi:10.21608/eajbsg.2023.317808

Zhang J cheng, Chen GY, Li XZ, et al. Phytotoxic, antibacterial, and antioxidant activities of mycotoxins and other metabolites from Trichoderma sp. Nat Prod Res. 2017;31(23):2745-2752. doi:10.1080/14786419.2017.1295235

Ravindran C, Varatharajan GR, Rajasabapathy R, Vijayakanth S, Kumar AH, Meena RM. A role for antioxidants in acclimation of marine derived pathogenic fungus (NIOCC 1) to salt stress. Microb Pathog. 2012;53(3-4):168-179. doi:10.1016/j.micpath.2012.07.004

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Published

2025-03-30

How to Cite

Wulandari, N. M. W., Dwijayanti, N. K., Putri, N. P. A. E., Putra, I. P. Y. A., Leliqia, N. P. E., Wibowo, J. T. ., Dwija, I. B. N. P., & Ariantari, N. P. (2025). Bioactivities and Molecular Identification from Marine Sediment-Derived Fungi Isolated from Amed and Tulamben Beaches. Jurnal Ilmiah Medicamento, 11(1), 74–85. https://doi.org/10.36733/medicamento.v11i1.10745

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